Short answer · Medically reviewed summary · Last updated: 2026-05-08
TL;DR: Alkaptonuria is a rare, inherited metabolic disorder where the body cannot properly break down two amino acids, tyrosine and phenylalanine, leading to the accumulation of a substance called homogentisic acid. This buildup causes urine to turn black upon exposure to air and eventually results in severe joint damage and ochronosis (bluish-black pigmentation of tissues). What causes Alkaptonuria? Alkaptonuria is caused by mutations in the HGD gene, which provides instructions for making an enzyme that breaks down homogentisic acid.
TL;DR: Alkaptonuria is a rare, inherited metabolic disorder where the body cannot properly break down two amino acids, tyrosine and phenylalanine, leading to the accumulation of a substance called homogentisic acid. This buildup causes urine to turn black upon exposure to air and eventually results in severe joint damage and ochronosis (bluish-black pigmentation of tissues).
Alkaptonuria is caused by mutations in the HGD gene, which provides instructions for making an enzyme that breaks down homogentisic acid. When this enzyme is inactive, the acid accumulates in the body and is excreted in urine. Over time, this acid deposits in connective tissues, such as cartilage and skin, causing them to darken and become brittle. This process, known as ochronosis, is the hallmark of Alkaptonuria.
While the condition is present from birth, symptoms often progress slowly throughout a patient’s life. The primary clinical manifestations of Alkaptonuria include:
Alkaptonuria is a very rare condition with an estimated global prevalence of 1 in 250,000 to 1,000,000 individuals. It affects both males and females equally, as it is inherited in an autosomal recessive pattern. While it occurs worldwide, certain populations—such as those in Slovakia and the Dominican Republic—have shown higher clusters of cases due to genetic founder effects.
Unlike common osteoarthritis, which typically develops in later life due to wear and tear, the joint damage seen in Alkaptonuria is directly linked to the deposition of pigmented metabolic waste in the cartilage. This creates a distinct clinical profile that often requires specialized management, which is why 31 members of the DiseaseMaps.org community have connected to share their experiences managing this lifelong condition.
Medical disclaimer: This content is for educational purposes only and does not constitute professional medical advice, diagnosis, or treatment. Always seek the advice of your physician or other qualified health provider with any questions regarding a medical condition.